PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g064050.1
Common NameMTR_3g064050
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 850aa    MW: 94266.8 Da    PI: 6.3444
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g064050.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.64.7e-23130231199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  Medtr3g064050.1 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFI--WN 219
                      99*****************************8544444..48************************************************..88 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  Medtr3g064050.1 220 EKNQLLLGIRRA 231
                      99999****997 PP

2Auxin_resp115.54.8e-38256339183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aaha +t+s F+v+YnPras+seFv++++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld vrW+nS+Wrs+k
  Medtr3g064050.1 256 AAHASATNSCFTVFYNPRASPSEFVIPLSKYIKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWQNSHWRSVK 339
                      799********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-49114259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-41123245IPR015300DNA-binding pseudobarrel domain
CDDcd100172.12E-21129230No hitNo description
SMARTSM010196.4E-24130232IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308130232IPR003340B3 DNA binding domain
PfamPF023622.5E-21130231IPR003340B3 DNA binding domain
PfamPF065072.2E-33256339IPR010525Auxin response factor
PfamPF023091.6E-7713807IPR033389AUX/IAA domain
SuperFamilySSF542777.19E-7718797No hitNo description
PROSITE profilePS5174523.809723807IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MKLSTSGLGQ QGHEGGGGEK KCLNSELWHA CAGPLVSLPT AGTRVVYFPQ GHSEQVSATT  60
NREIDGQIPN YPSLPPQLVC QLHNVTMHAD VETDEVYAQM TLQPLTPEEQ KDTFLPMELG  120
IPSKQPSNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FSQQPPAQEL IARDLHDVEW  180
KFRHIFRGQP KRHLLTTGWS IFVSAKRLVA GDSVLFIWNE KNQLLLGIRR ANRPQTVMPS  240
SVLSSDSMHI GLLAAAAHAS ATNSCFTVFY NPRASPSEFV IPLSKYIKAV YHTRISVGMR  300
FRMLFETEES SVRRYMGTIT GISDLDAVRW QNSHWRSVKV GWDESTAGER QPRVSLWEIE  360
PLTTFPMYPS LFPLRLKRPW HPGTSSLLDG RDEATNALMW MRGGPADQGL NSLNFQGAGM  420
LPWMQQRLDP TLLGNDQNQQ YQAMLAAAGM QNMGGGYLMR PQMVNFQQQP THYLQSGNNN  480
SPLQLHQPQS IQQSVSSNMM QPQQTQILTE NLSQHLLQKP NNNQELQAQQ QQHAYQDTLL  540
VQNDQLHQRQ QQSNVPSPSY SKPDFLDSNI KFPASVPSGQ NMLGSLCPEG TGNLLNLSSL  600
TRSGQSLMNE QLPQQSWTPK YGNMQVNAFG SAMSHAQYSG KDSAIVPPHC DSDAQNHTLS  660
GVNIDSSGLL LPTTVPNYTA STTDTGASTQ LGESGFQGSL YACMQDSSFL QNAEQIDTQN  720
QNPTFVKVYK SGSVGRSLDI SRFSCYRELR EELGQMFGIE GKLEDPLRSG WQLVFVDREN  780
DVLLLGDDPW ESFVNNVWYI KILSPEDIQK MGDQAVEMHG LGSGQRLNGT GESHHIVSGQ  840
PPSIGSLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1591736045388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1515290.0AC151529.20 Medicago truncatula clone mth2-7n23, complete sequence.
GenBankCU4682440.0CU468244.3 M.truncatula DNA sequence from clone MTH2-16M9 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600594.10.0auxin response factor 2
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLG7J7V10.0G7J7V1_MEDTR; Auxin response factor
STRINGGLYMA11G31940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49582850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]